STRINGSTRING
BACCAP_00662 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00662" - DNA-binding helix-turn-helix protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00662DNA-binding helix-turn-helix protein (307 aa)    
Predicted Functional Partners:
BACCAP_02820
DNA-binding helix-turn-helix protein (307 aa)
   
          0.778
BACCAP_03547
DNA-binding helix-turn-helix protein (451 aa)
   
          0.777
BACCAP_00140
DNA-binding helix-turn-helix protein (253 aa)
   
          0.758
BACCAP_01068
DNA-binding helix-turn-helix protein (348 aa)
   
          0.737
BACCAP_04810
DNA-binding helix-turn-helix protein (89 aa)
   
          0.651
BACCAP_00663
Alpha amylase, catalytic domain protein (619 aa)
              0.524
BACCAP_01859
DNA-binding helix-turn-helix protein (129 aa)
   
          0.507
BACCAP_02309
Uncharacterized protein (248 aa)
   
          0.477
BACCAP_00664
Uncharacterized protein (196 aa)
              0.454
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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