STRINGSTRING
BACCAP_00664 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00664" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00664Uncharacterized protein (196 aa)    
Predicted Functional Partners:
BACCAP_00663
Alpha amylase, catalytic domain protein (619 aa)
              0.728
BACCAP_00665
Uncharacterized protein (291 aa)
 
          0.706
BACCAP_00666
DNA gyrase/topoisomerase IV, A subunit (747 aa)
              0.534
BACCAP_00667
DNA topoisomerase (ATP-hydrolyzing) (660 aa)
              0.489
BACCAP_02359
Uncharacterized protein (168 aa)
 
          0.475
BACCAP_00662
DNA-binding helix-turn-helix protein (307 aa)
              0.454
BACCAP_00530
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (300 aa)
 
          0.400
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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