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BACCAP_00727 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00727" - 23S rRNA in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_0072723S rRNA (Uracil-5-)-methyltransferase RumA (454 aa)    
Predicted Functional Partners:
sun
Ribosomal RNA small subunit methyltransferase B (447 aa)
 
  0.948
BACCAP_00728
Acetyltransferase, GNAT family (184 aa)
              0.860
BACCAP_00729
Response regulator receiver domain protein (232 aa)
              0.859
BACCAP_00730
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein (173 aa)
              0.859
BACCAP_04660
RNA methyltransferase, TrmH family (252 aa)
 
 
  0.806
BACCAP_01418
RNA methyltransferase, TrmH family, group 3 (258 aa)
 
 
  0.783
BACCAP_00726
Uncharacterized protein (294 aa)
              0.771
BACCAP_04400
RNA methyltransferase, TrmH family (284 aa)
   
 
  0.764
maf
Maf-like protein maf (196 aa)
        0.759
truA
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (249 aa)
   
   
  0.759
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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