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BACCAP_00735 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00735" - 23S rRNA in Pseudoflavonifractor capillosus
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_0073523S rRNA (Uracil-5-)-methyltransferase RumA (412 aa)    
Predicted Functional Partners:
sun
Ribosomal RNA small subunit methyltransferase B (447 aa)
 
  0.945
BACCAP_04400
RNA methyltransferase, TrmH family (284 aa)
 
 
  0.794
BACCAP_04660
RNA methyltransferase, TrmH family (252 aa)
 
 
  0.777
BACCAP_00737
Peptidase, S41 family (439 aa)
              0.763
truA
tRNA-uridine isomerase I ; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (249 aa)
   
   
  0.759
BACCAP_03584
RNA methyltransferase, RsmD family (181 aa)
 
 
  0.751
BACCAP_01418
RNA methyltransferase, TrmH family, group 3 (258 aa)
   
 
  0.749
BACCAP_01193
Methyltransferase domain protein (249 aa)
   
 
  0.705
ksgA
S-adenosylmethionine-6-N’, N’-adenosyl(rRNA) dimethyltransferase ; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (290 aa)
   
 
  0.687
ylqF
Ribosome biogenesis GTPase A ; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (296 aa)
   
        0.685
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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