STRINGSTRING
BACCAP_00737 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00737" - Peptidase, S41 family in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00737Peptidase, S41 family (439 aa)    
Predicted Functional Partners:
BACCAP_00735
23S rRNA (Uracil-5-)-methyltransferase RumA (412 aa)
              0.763
BACCAP_01286
Uncharacterized protein (339 aa)
   
          0.738
BACCAP_00738
Uncharacterized protein (134 aa)
              0.634
BACCAP_00736
Uncharacterized protein (45 aa)
              0.595
BACCAP_00734
Uncharacterized protein (83 aa)
              0.502
BACCAP_00741
HAD hydrolase, TIGR02254 family (232 aa)
              0.461
BACCAP_00740
Uncharacterized protein (155 aa)
              0.461
BACCAP_00739
Uncharacterized protein (263 aa)
              0.461
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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