STRINGSTRING
BACCAP_00738 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00738" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00738Uncharacterized protein (134 aa)    
Predicted Functional Partners:
BACCAP_00737
Peptidase, S41 family (439 aa)
              0.634
BACCAP_00780
Uncharacterized protein (357 aa)
   
          0.631
BACCAP_00741
HAD hydrolase, TIGR02254 family (232 aa)
              0.607
BACCAP_00740
Uncharacterized protein (155 aa)
              0.607
BACCAP_00739
Uncharacterized protein (263 aa)
              0.607
BACCAP_03075
Uncharacterized protein (275 aa)
   
          0.574
BACCAP_00735
23S rRNA (Uracil-5-)-methyltransferase RumA (412 aa)
              0.572
BACCAP_04809
DNA-binding helix-turn-helix protein (83 aa)
   
          0.553
BACCAP_02452
Uncharacterized protein (286 aa)
   
          0.513
BACCAP_02238
Uncharacterized protein (157 aa)
   
          0.460
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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