STRINGSTRING
BACCAP_00746 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00746" - Anti-sigma-V factor RsiV domain protein in Pseudoflavonifractor capillosus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00746Anti-sigma-V factor RsiV domain protein (287 aa)    
Predicted Functional Partners:
sigV
RNA polymerase sigma factor (185 aa)
 
 
 
  0.977
BACCAP_00742
GDSL-like protein (319 aa)
              0.694
BACCAP_00537
Sigma-70, region 4 (127 aa)
 
 
 
  0.685
BACCAP_00743
Uncharacterized protein (159 aa)
              0.676
BACCAP_04872
RNA polymerase sigma-70 factor, sigma-E family (166 aa)
     
 
  0.582
BACCAP_00127
Sigma-70 region 2 (183 aa)
 
 
 
  0.574
BACCAP_00905
Sigma-70 region 2 (159 aa)
 
 
 
  0.565
BACCAP_01304
Uncharacterized protein (155 aa)
 
 
 
  0.556
BACCAP_04378
RNA polymerase sigma factor SigX (165 aa)
 
 
 
  0.549
BACCAP_00518
Sigma-70 region 2 (175 aa)
 
 
 
  0.547
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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