STRINGSTRING
BACCAP_00789 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00789" - Pyridoxamine 5'-phosphate oxidase family protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00789Pyridoxamine 5’-phosphate oxidase family protein (133 aa)    
Predicted Functional Partners:
BACCAP_00103
Pyridoxal kinase (303 aa)
       
    0.628
BACCAP_00786
Transcriptional regulator, HxlR family (109 aa)
              0.598
BACCAP_00788
Uncharacterized protein (231 aa)
              0.560
BACCAP_02262
Transcriptional regulator, MarR family (152 aa)
 
          0.443
BACCAP_00787
Uncharacterized protein (74 aa)
              0.435
BACCAP_01737
Transcriptional regulator, HxlR family (121 aa)
              0.403
BACCAP_01731
Transcriptional regulator, HxlR family (115 aa)
              0.403
BACCAP_00806
Transcriptional regulator, HxlR family (116 aa)
              0.403
BACCAP_04560
Macro domain protein (331 aa)
              0.400
BACCAP_02984
Macro domain protein (347 aa)
              0.400
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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