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STRINGSTRING
EDN01242.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01242.1" - Transcriptional regulator, Fur family in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
EDN01242.1Transcriptional regulator, Fur family; COG- COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location- Cytoplasmic, score-8.96; Belongs to the Fur family (127 aa)    
Predicted Functional Partners:
EDN01243.1
Hydrogenase, Fe-only; KEGG- cpr-CPR_0938 1.8e-157 periplasmic [Fe] hydrogenase 1 K00532; COG- COG4624 Iron only hydrogenase large subunit, C-terminal domain (449 aa)
              0.736
EDN01241.1
annotation not available (44 aa)
              0.618
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor (341 aa)
         
  0.609
EDN01244.1
Transcriptional regulator, PadR family; COG- COG1695 Predicted transcriptional regulators (183 aa)
 
          0.565
EDN01240.1
Acetyltransferase, GNAT family; KEGG- lsl-LSL_1334 1.3e-51 wecD; acetyltransferase K00680; COG- COG3153 Predicted acetyltransferase; Psort location- Cytoplasmic, score-8.96 (208 aa)
              0.556
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (889 aa)
         
  0.466
EDN01245.1
Uncharacterized protein; COG- COG0655 Multimeric flavodoxin WrbA (449 aa)
              0.428
EDM99371.1
Transcriptional regulator, Rrf2 family; KEGG- ama-AM656 1.5e-12 aminotransferase, class V K04487; COG- COG1959 Predicted transcriptional regulator; Psort location- Cytoplasmic, score-8.96 (144 aa)
         
  0.409
EDN00552.1
KEGG- deh-cbdb_A762 2.2e-31 metallo-beta-lactamase family protein K01069; COG- COG0491 Zn-dependent hydrolases, including glyoxylases (209 aa)
 
          0.409
EDN00876.1
Putative alkyl hydroperoxide reductase F subunit; KEGG- blo-BL0614 8.9e-140 thioredoxin reductase-like protein K00384; COG- COG0526 Thiol-disulfide isomerase and thioredoxins; Psort location- Cytoplasmic, score-9.97 (540 aa)
         
  0.404
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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