STRINGSTRING
hcaR protein (Pseudoflavonifractor capillosus) - STRING interaction network
"hcaR" - Hca operon transcriptional activator in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcaRHca operon transcriptional activator (294 aa)    
Predicted Functional Partners:
BACCAP_00824
Uncharacterized protein (44 aa)
              0.859
BACCAP_01483
LysR substrate binding domain protein (302 aa)
   
          0.778
BACCAP_00825
Transcriptional regulator, MarR family (156 aa)
              0.652
BACCAP_00826
ABC transporter, ATP-binding protein (567 aa)
              0.642
BACCAP_00822
Transcriptional regulator, LuxR family (817 aa)
              0.575
BACCAP_00827
ABC transporter, ATP-binding protein (628 aa)
              0.518
BACCAP_00821
Uncharacterized protein (99 aa)
              0.474
BACCAP_04010
Transcriptional regulator, AraC family (425 aa)
   
          0.408
BACCAP_00820
Uncharacterized protein (4122 aa)
              0.404
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
Server load: low (11%) [HD]