• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
EDN01286.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01286.1" - DNA-binding helix-turn-helix protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01286.1DNA-binding helix-turn-helix protein; COG- COG1396 Predicted transcriptional regulators (72 aa)    
Predicted Functional Partners:
EDN01285.1
DNA internalization competence protein ComEC/Rec2-like protein; KEGG- vpa-VP2295 0.00056 gloB; putative hydroxyacylglutathione hydrolase GloB K01069; COG- COG0658 Predicted membrane metal-binding protein; Psort location- CytoplasmicMembrane, score-10.00 (768 aa)
              0.853
holA
KEGG- gme-Gmet_2298 1.0e-28 DNA polymerase III, delta subunit K02340; COG- COG1466 DNA polymerase III, delta subunit; Psort location- Cytoplasmic, score-8.96 (347 aa)
              0.777
EDN01283.1
KEGG- ssp-SSP2264 4.4e-19 ribonuclease M5 K05985; COG- COG1658 Small primase-like proteins (Toprim domain) (203 aa)
              0.752
EDN01282.1
Transcriptional regulator, Fur family; COG- COG0735 Fe2+/Zn2+ uptake regulation proteins; Psort location- Cytoplasmic, score-9.97; Belongs to the Fur family (178 aa)
              0.686
EDN01281.1
Rubredoxin; KEGG- cpr-CPR_0938 3.2e-12 periplasmic [Fe] hydrogenase 1 K00532; COG- COG1592 Rubrerythrin; Psort location- Cytoplasmic, score-8.96 (180 aa)
              0.597
EDM97512.1
DNA-binding helix-turn-helix protein; COG- COG1396 Predicted transcriptional regulators; Psort location- Cytoplasmic, score-8.96 (79 aa)
   
          0.557
EDN01776.1
DNA-binding helix-turn-helix protein; COG- COG1396 Predicted transcriptional regulators (240 aa)
   
          0.516
EDN01287.1
KEGG- rno-60580 4.0e-25 Hint1; histidine triad nucleotide binding protein 1 K06069; COG- COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases; Psort location- Cytoplasmic, score-8.96 (112 aa)
              0.494
EDM99217.1
annotation not available (305 aa)
     
      0.449
EDM99215.1
annotation not available (408 aa)
     
      0.449
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (10%) [HD]