STRINGSTRING
BACCAP_00873 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00873" - ABC transporter substrate binding protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00873ABC transporter substrate binding protein (346 aa)    
Predicted Functional Partners:
BACCAP_00874
Branched-chain amino acid ABC transporter, permease protein (314 aa)
   
  0.975
BACCAP_00875
ABC transporter, ATP-binding protein (267 aa)
   
  0.949
BACCAP_03509
Branched-chain amino acid ABC transporter, permease protein (315 aa)
   
  0.907
BACCAP_03508
ABC transporter, ATP-binding protein (266 aa)
   
  0.884
BACCAP_00872
Uncharacterized protein (40 aa)
              0.638
BACCAP_00871
Glycosyltransferase, WecB/TagA/CpsF family (240 aa)
              0.638
tmk
dTMP kinase ; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (224 aa)
              0.633
BACCAP_00869
DJ-1 family protein (203 aa)
              0.604
BACCAP_00868
5-formyltetrahydrofolate cyclo-ligase (186 aa)
              0.602
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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