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STRINGSTRING
EDN01336.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01336.1" - Uncharacterized protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01336.1Uncharacterized protein; KEGG- eci-UTI89_C1627 5.5e-08 entS; EntS/YbdA MFS transporter; COG- NOG16847 non supervised orthologous group (569 aa)    
Predicted Functional Partners:
EDM99943.1
KEGG- lwe-lwe2287 8.0e-139 fruA; PTS system, fructose-specific, IIABC component K00890; COG- COG1299 Phosphotransferase system, fructose-specific IIC component; Psort location- CytoplasmicMembrane, score-10.00 (642 aa)
         
  0.801
EDN01340.1
Repeat protein; KEGG- cpe-CPE1364 1.3e-17 beta-N-acetylhexosaminidase K01207; COG- NOG04032 non supervised orthologous group (2691 aa)
     
  0.736
EDN01338.1
annotation not available (737 aa)
              0.603
EDN01337.1
Sigma-70 region 2; KEGG- bcz-BCZK3297 1.2e-09 RNA polymerase ECF-type sigma factor K03088; COG- COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Psort location- Cytoplasmic, score-8.96; Belongs to the sigma-70 factor family. ECF subfamily (159 aa)
              0.603
EDN01339.1
annotation not available (49 aa)
              0.512
EDM97974.1
KEGG- chu-CHU_1335 1.9e-10 CHU large protein; endoglucanase-related protein, glucosyl hydrolase family 9 protein K01238; COG- NOG16349 non supervised orthologous group (2346 aa)
     
  0.450
EDN00502.1
Uncharacterized protein; Psort location- Cytoplasmic, score-8.96 (170 aa)
   
          0.442
EDM98355.1
Uncharacterized protein; KEGG- eci-UTI89_C1627 8.7e-09 entS; EntS/YbdA MFS transporter; COG- NOG20194 non supervised orthologous group (1268 aa)
       
      0.420
EDN01354.1
Uncharacterized protein; KEGG- sce-YIR019C 5.0e-10 MUC1; Required for invasion and pseudohyphae formation in response to nitrogen starvation K01178; COG- NOG29868 non supervised orthologous group; Psort location- OuterMembrane, score-9.52 (822 aa)
       
      0.420
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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