STRINGSTRING
BACCAP_00908 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00908" - Repeat protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00908Repeat protein (2691 aa)    
Predicted Functional Partners:
BACCAP_00907
Uncharacterized protein (49 aa)
              0.859
BACCAP_00906
Uncharacterized protein (737 aa)
              0.718
BACCAP_00905
Sigma-70 region 2 (159 aa)
              0.718
BACCAP_01058
Carbohydrate ABC transporter, carbohydrate-binding protein (456 aa)
   
          0.689
BACCAP_01145
Polysaccharide lyase family 8, super-sandwich domain protein (1343 aa)
   
          0.636
BACCAP_04123
Uncharacterized protein (1183 aa)
   
          0.610
BACCAP_00904
Uncharacterized protein (569 aa)
 
          0.602
BACCAP_00197
Glycosyl hydrolase family 20, catalytic domain protein (1635 aa)
   
          0.595
gnpA
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (723 aa)
   
          0.559
BACCAP_04695
Uncharacterized protein (668 aa)
   
          0.475
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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