STRINGSTRING
BACCAP_00950 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00950" - Site-specific recombinase, phage integrase family in Pseudoflavonifractor capillosus
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00950Site-specific recombinase, phage integrase family (358 aa)    
Predicted Functional Partners:
BACCAP_00949
Uncharacterized protein (67 aa)
 
          0.969
BACCAP_00951
Uncharacterized protein (106 aa)
 
          0.967
BACCAP_00948
Uncharacterized protein (176 aa)
 
          0.881
BACCAP_00959
Uncharacterized protein (64 aa)
 
          0.790
BACCAP_00978
Uncharacterized protein (111 aa)
 
          0.776
BACCAP_00958
Uncharacterized protein (162 aa)
 
          0.757
BACCAP_00889
Site-specific recombinase, phage integrase family (377 aa)
   
          0.722
BACCAP_00952
DNA repair protein RadA domain family protein (340 aa)
 
          0.711
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (774 aa)
   
   
  0.683
BACCAP_03594
DNA topoisomerase (733 aa)
   
   
  0.683
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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