STRINGSTRING
BACCAP_00954 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_00954" - Plasmid recombination enzyme in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_00954Plasmid recombination enzyme (387 aa)    
Predicted Functional Partners:
BACCAP_00949
Uncharacterized protein (67 aa)
 
          0.682
BACCAP_00958
Uncharacterized protein (162 aa)
 
          0.637
BACCAP_00953
Uncharacterized protein (39 aa)
              0.637
BACCAP_00948
Uncharacterized protein (176 aa)
 
          0.629
BACCAP_00959
Uncharacterized protein (64 aa)
 
          0.624
BACCAP_00978
Uncharacterized protein (111 aa)
 
          0.623
BACCAP_00951
Uncharacterized protein (106 aa)
 
          0.610
BACCAP_02847
Histidine kinase (334 aa)
   
          0.585
BACCAP_00950
Site-specific recombinase, phage integrase family (358 aa)
 
          0.508
BACCAP_02851
Uncharacterized protein (358 aa)
   
          0.466
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
Server load: low (8%) [HD]