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STRINGSTRING
EDN01029.1 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"EDN01029.1" - Radical SAM domain protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN01029.1Radical SAM domain protein; KEGG- mtu-Rv3729 0.00024 possible transferase; COG- COG2896 Molybdenum cofactor biosynthesis enzyme; Psort location- Cytoplasmic, score-8.96 (337 aa)    
Predicted Functional Partners:
EDN01030.1
YcaO-like family; COG- COG1944 Uncharacterized conserved protein; Psort location- Cytoplasmic, score-8.96 (581 aa)
              0.781
EDN01028.1
Radical SAM domain protein; KEGG- gka-GK0942 1.9e-18 Mg-protoporphyrin IX monomethyl ester oxidative cyclase K04034; COG- COG1032 Fe-S oxidoreductase; Psort location- Cytoplasmic, score-8.96 (598 aa)
              0.735
EDN01031.1
Uncharacterized protein; Psort location- Cytoplasmic, score-8.96 (262 aa)
              0.730
EDN01032.1
Histidinol phosphate phosphatase HisJ family; KEGG- oih-OB0554 4.8e-22 histidinol phosphatase K04486; COG- COG1387 Histidinol phosphatase and related hydrolases of the PHP family; Psort location- Cytoplasmic, score-8.96 (253 aa)
              0.639
EDN01025.1
Radical SAM domain protein; COG- NOG24503 non supervised orthologous group; Psort location- Cytoplasmic, score-8.96 (442 aa)
         
  0.616
EDN01027.1
Uncharacterized protein; Psort location- Cytoplasmic, score-8.96 (273 aa)
              0.599
EDN01026.1
annotation not available (218 aa)
              0.599
EDN01024.1
Uncharacterized protein; Psort location- Cytoplasmic, score-8.96 (312 aa)
              0.599
EDN00223.1
annotation not available (73 aa)
     
 
  0.546
EDN01033.1
Uncharacterized protein; Psort location- Cytoplasmic, score-8.96 (274 aa)
              0.537
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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