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carB protein (Pseudoflavonifractor capillosus) - STRING interaction network
"carB" - Carbamoyl-phosphate synthetase ammonia chain in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
carBCarbamoyl-phosphate synthetase ammonia chain (1098 aa)    
Predicted Functional Partners:
carA
Carbamoyl-phosphate synthetase glutamine chain (363 aa)
  0.999
pyrB
Aspartate transcarbamylase (354 aa)
  0.999
pyrC
Dihydroorotase (427 aa)
  0.998
argG
Citrulline--aspartate ligase (430 aa)
  0.997
BACCAP_00721
Phosphoribosylformylglycinamidine synthase (1235 aa)
   
   
  0.995
argF
Ornithine carbamoyltransferase ; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline (307 aa)
 
  0.988
hydA
Dihydropyrimidinase (472 aa)
 
  0.986
BACCAP_01358
Aspartate/ornithine carbamoyltransferase family protein (399 aa)
   
  0.976
ygeW
Putative carbamoyltransferase YgeW (412 aa)
   
  0.976
pyrD
Dihydroorotate dehydrogenase ; Catalyzes the conversion of dihydroorotate to orotate (340 aa)
 
 
  0.967
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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