STRINGSTRING
BACCAP_01041 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_01041" - Transporter gate domain protein in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_01041Transporter gate domain protein (171 aa)    
Predicted Functional Partners:
BACCAP_01042
Uncharacterized protein (241 aa)
     
  0.998
BACCAP_04251
Putative sporulation integral membrane protein YlbJ (389 aa)
 
   
  0.751
BACCAP_01043
Transcriptional regulator, AbrB family (80 aa)
 
     
  0.684
BACCAP_01040
Oxidoreductase, aldo/keto reductase family protein (334 aa)
              0.559
ytfJ
Sporulation protein YtfJ (138 aa)
 
          0.507
BACCAP_01044
Uncharacterized protein (51 aa)
              0.455
BACCAP_02449
Serine-type D-Ala-D-Ala carboxypeptidase (454 aa)
         
  0.441
BACCAP_01936
Serine-type D-Ala-D-Ala carboxypeptidase (392 aa)
         
  0.441
BACCAP_03469
Pseudouridine synthase (238 aa)
              0.404
BACCAP_01937
Pseudouridine synthase (246 aa)
              0.404
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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