• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
gnpA protein (Pseudoflavonifractor capillosus) - STRING interaction network
"gnpA" - 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnpA1,3-beta-galactosyl-N-acetylhexosamine phosphorylase; COG- NOG06132 non supervised orthologous group (723 aa)    
Predicted Functional Partners:
EDN01115.1
KEGG- cya-CYA_1846 0.00045 modB; molybdate ABC transporter, permease protein K02018; COG- COG0395 ABC-type sugar transport system, permease component; Psort location- CytoplasmicMembrane, score-10.00 (293 aa)
 
          0.936
EDN01116.1
ABC transporter, permease protein; KEGG- baa-BA_0884 0.00065 binding-protein-dependent transport systems inner membrane component K00294; COG- COG1175 ABC-type sugar transport systems, permease components; Psort location- CytoplasmicMembrane, score-10.00 (312 aa)
 
          0.922
EDN01117.1
Carbohydrate ABC transporter, carbohydrate-binding protein; COG- COG1653 ABC-type sugar transport system, periplasmic component (456 aa)
 
          0.918
EDN01123.1
Phosphotransferase enzyme family; COG- NOG04719 non supervised orthologous group; Psort location- Cytoplasmic, score-8.96 (370 aa)
 
     
  0.838
EDN01114.1
annotation not available (71 aa)
              0.835
EDN01119.1
Transcriptional regulator, AraC family; KEGG- bca-BCE_3772 7.2e-19 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K00567; COG- COG2207 AraC-type DNA-binding domain-containing proteins; Psort location- Cytoplasmic, score-9.97 (283 aa)
 
          0.744
EDN01112.1
Dioxygenase; KEGG- btk-BT9727_3111 5.3e-14 N-acetylmuramoyl-L-alanine amidase K01447; COG- NOG04032 non supervised orthologous group (2307 aa)
 
     
  0.655
EDN01122.1
Uncharacterized protein; KEGG- cdi-DIP0360 0.00020 rfbA; glucose-1-phosphate thymidylyltransferase K00973; COG- NOG09722 non supervised orthologous group; Psort location- Cytoplasmic, score-8.96 (308 aa)
 
          0.519
EDN01206.1
Transcriptional regulator, AraC family; KEGG- bca-BCE_3772 5.6e-16 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K00567; COG- COG2207 AraC-type DNA-binding domain-containing proteins; Psort location- Cytoplasmic, score-8.96 (281 aa)
 
          0.480
EDN01120.1
KEGG- bcz-BCZK3497 6.7e-10 adaA; transcriptional regulator, AraC family K00567; COG- COG2207 AraC-type DNA-binding domain-containing proteins; Psort location- Cytoplasmic, score-9.97 (301 aa)
 
          0.417
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
Server load: low (9%) [HD]