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gnpA protein (Pseudoflavonifractor capillosus) - STRING interaction network
"gnpA" - 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnpA1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (723 aa)    
Predicted Functional Partners:
BACCAP_01056
ABC transporter, permease protein (293 aa)
 
          0.970
BACCAP_01057
ABC transporter, permease protein (312 aa)
 
          0.962
BACCAP_01058
Carbohydrate ABC transporter, carbohydrate-binding protein (456 aa)
 
          0.929
BACCAP_01060
Transcriptional regulator, AraC family (283 aa)
 
          0.862
BACCAP_01064
Phosphotransferase enzyme family (370 aa)
 
          0.848
BACCAP_01055
Uncharacterized protein (71 aa)
              0.829
BACCAP_01053
Dioxygenase (2307 aa)
 
     
  0.821
BACCAP_01147
Transcriptional regulator, AraC family (281 aa)
 
          0.608
BACCAP_01519
Uncharacterized protein (219 aa)
   
          0.590
BACCAP_00908
Repeat protein (2691 aa)
   
          0.559
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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