STRINGSTRING
spoIVB protein (Pseudoflavonifractor capillosus) - STRING interaction network
"spoIVB" - SpoIVB peptidase in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIVBSpoIVB peptidase (371 aa)    
Predicted Functional Partners:
BACCAP_01101
Putative stage II sporulation protein E (787 aa)
   
     
  0.878
BACCAP_01071
Stage 0 sporulation protein A homolog ; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process (275 aa)
 
     
  0.871
spoIVA
Stage IV sporulation protein A (518 aa)
   
     
  0.870
spoIID
Stage II sporulation protein D (338 aa)
 
     
  0.835
spoIIR
Stage II sporulation protein R (216 aa)
   
     
  0.827
sigE
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (240 aa)
 
     
  0.808
spoIIAB
Anti-sigma F factor (148 aa)
 
     
  0.801
BACCAP_02039
Putative stage III sporulation protein AA (314 aa)
 
   
  0.800
BACCAP_04303
RNA polymerase sigma-K factor (221 aa)
 
     
  0.797
BACCAP_01686
Putative stage V sporulation protein T (180 aa)
 
     
  0.793
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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