STRINGSTRING
BACCAP_01078 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_01078" - DNA-binding helix-turn-helix protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_01078DNA-binding helix-turn-helix protein (94 aa)    
Predicted Functional Partners:
BACCAP_02432
DNA-binding helix-turn-helix protein (210 aa)
 
     
  0.769
BACCAP_03518
DNA-binding helix-turn-helix protein (409 aa)
   
          0.737
BACCAP_00776
DNA-binding helix-turn-helix protein (360 aa)
   
          0.736
BACCAP_04810
DNA-binding helix-turn-helix protein (89 aa)
 
          0.726
BACCAP_01431
DNA-binding helix-turn-helix protein (417 aa)
   
          0.720
BACCAP_02820
DNA-binding helix-turn-helix protein (307 aa)
   
          0.717
BACCAP_01079
Uncharacterized protein (43 aa)
              0.676
BACCAP_04557
DNA-binding helix-turn-helix protein (157 aa)
   
          0.650
BACCAP_01080
Uncharacterized protein (48 aa)
              0.640
BACCAP_04149
DNA-binding helix-turn-helix protein (259 aa)
 
     
  0.639
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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