STRINGSTRING
agcS protein (Pseudoflavonifractor capillosus) - STRING interaction network
"agcS" - Amino acid carrier protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agcSAmino acid carrier protein (471 aa)    
Predicted Functional Partners:
BACCAP_04438
Citrate synthase (454 aa)
   
   
  0.756
BACCAP_03079
Citrate synthase (455 aa)
   
   
  0.756
BACCAP_01181
Uncharacterized protein (34 aa)
              0.596
BACCAP_01382
Uncharacterized protein (182 aa)
   
   
  0.572
BACCAP_01183
Uncharacterized protein (141 aa)
              0.517
BACCAP_01320
Alanine racemase ; Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids (355 aa)
 
     
  0.485
BACCAP_02261
Transporter, SSS family (484 aa)
 
   
  0.433
ackA
Acetokinase ; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction (399 aa)
     
   
  0.430
BACCAP_04183
Alanine racemase ; Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids (380 aa)
         
  0.407
BACCAP_04155
Alanine racemase (715 aa)
         
  0.407
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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