STRINGSTRING
BACCAP_01220 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_01220" - LysR substrate binding domain protein in Pseudoflavonifractor capillosus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_01220LysR substrate binding domain protein (286 aa)    
Predicted Functional Partners:
BACCAP_01483
LysR substrate binding domain protein (302 aa)
   
          0.772
BACCAP_02407
Transcriptional regulator, LysR family (315 aa)
 
     
  0.754
BACCAP_01218
Pyridine nucleotide-disulfide oxidoreductase (298 aa)
         
  0.720
BACCAP_01219
Uncharacterized protein (36 aa)
              0.706
BACCAP_01147
Transcriptional regulator, AraC family (281 aa)
 
   
  0.568
BACCAP_02166
Transcriptional regulator, AraC family (334 aa)
 
   
  0.559
araR
Arabinose metabolism transcriptional repressor (354 aa)
   
 
 
  0.534
BACCAP_02559
Transcriptional regulator, AraC family (319 aa)
   
   
  0.502
BACCAP_02552
Transcriptional regulator, AraC family (326 aa)
   
   
  0.502
BACCAP_02181
Transcriptional regulator, AraC family (309 aa)
   
   
  0.502
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
Server load: low (7%) [HD]