STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDN00913.1KEGG: dvu:DVU3332 8.2e-153 heavy metal translocating P-type ATPase; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score:7.88. (730 aa)    
Predicted Functional Partners:
EDN00911.1
Hypothetical protein.
 
     0.947
EDN01320.1
Copper-exporting ATPase; KEGG: tde:TDE0008 1.7e-232 copper-translocating P-type ATPase K01533; COG: COG2217 Cation transport ATPase; Psort location: CytoplasmicMembrane, score:10.00.
 
 
0.876
EDM98253.1
Heavy metal-associated domain protein; KEGG: fnu:FN0259 7.1e-12 zinc-transporting ATPase K01534; COG: COG2608 Copper chaperone; Psort location: Cytoplasmic, score:8.96.
  
 
 0.837
EDM97391.1
Hypothetical protein.
 
     0.780
EDN00912.1
Hypothetical protein.
       0.572
EDN00410.1
KEGG: rru:Rru_A1450 9.8e-09 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators.
  
  
 0.554
EDM98254.1
KEGG: rru:Rru_A1450 2.1e-08 transcriptional regulator, ArsR family; COG: COG0640 Predicted transcriptional regulators; Psort location: Cytoplasmic, score:8.96.
  
  
 0.554
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit.
  
  
 0.457
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacteroides capillosus ATCC 29799, P. capillosus ATCC 29799, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799
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