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BACCAP_01269 protein (Pseudoflavonifractor capillosus) - STRING interaction network
"BACCAP_01269" - Cyclic nucleotide-binding domain protein in Pseudoflavonifractor capillosus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BACCAP_01269Cyclic nucleotide-binding domain protein (224 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (441 aa)
       
  0.897
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (315 aa)
     
 
  0.834
BACCAP_01270
Uncharacterized protein (350 aa)
         
  0.785
BACCAP_01271
ABC transporter, permease protein (249 aa)
              0.781
BACCAP_01272
ABC transporter, ATP-binding protein (193 aa)
              0.780
BACCAP_04697
Leucine Rich Repeat protein (312 aa)
   
  0.734
BACCAP_01968
Putative internalin-J (458 aa)
   
  0.734
BACCAP_00583
Uncharacterized protein (280 aa)
 
   
  0.694
BACCAP_03977
Kinase domain protein (396 aa)
     
  0.693
BACCAP_02267
Kinase domain protein (235 aa)
     
  0.693
Your Current Organism:
Pseudoflavonifractor capillosus
NCBI taxonomy Id: 411467
Other names: Bacillus capillosus, Bacteroides capillosus, Bacteroides capillosus ATCC 29799, P. capillosus, P. capillosus ATCC 29799, Pseudobacterium capillosum, Pseudoflavonifractor, Pseudoflavonifractor Carlier et al. 2010, Pseudoflavonifractor capillosus, Pseudoflavonifractor capillosus ATCC 29799, Pseudoflavonifractor capillosus str. ATCC 29799, Pseudoflavonifractor capillosus strain ATCC 29799, Ristella capillosa
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