STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB77134.1Hypothetical protein. (310 aa)    
Predicted Functional Partners:
EFB75852.1
NAD dependent epimerase/dehydratase family protein; KEGG: vfi:VF0192 3.4e-83 UDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase K00100; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.898
EFB77133.1
ATP-grasp domain protein; KEGG: ctc:CTC01706 5.2e-32 putative carbamoyl-phosphate synthase large chain K01954; Psort location: Cytoplasmic, score: 8.96.
 
    0.858
EFB76969.1
KEGG: sus:Acid_7288 2.8e-56 undecaprenyl-phosphate galactose phosphotransferase K00996; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.846
EFB77136.1
KEGG: psp:PSPPH_3420 3.9e-82 aminotransferase, DegT/DnrJ/EryC1/StrS family K01726; Psort location: Cytoplasmic, score: 8.96; Belongs to the DegT/DnrJ/EryC1 family.
 
     0.843
EFB77132.1
Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.825
EFB77421.1
Oxidoreductase NAD-binding domain protein; KEGG: rde:RD1_0005 6.5e-25 vanB; vanillate O-demethylase oxidoreductase, putative K00492; Psort location: Cytoplasmic, score: 8.96.
  
 
 0.818
rfbB
KEGG: cpf:CPF_0482 3.6e-143 rfbB; dTDP-glucose 4,6-dehydratase K01710; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.776
EFB77135.1
KEGG: bcz:BCZK3187 2.3e-15 acetyltransferase, GNAT family K00680; Psort location: Cytoplasmic, score: 8.96.
 
 
 0.762
EFB76414.1
Polysaccharide biosynthesis protein; KEGG: lsl:LSL_0995 5.1e-121 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.617
EFB75851.1
Polysaccharide biosynthesis protein; KEGG: saa:SAUSA300_0156 2.0e-103 cap5E; capsular polysaccharide biosynthesis protein Cap5E K01726.
  
 
 0.617
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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