STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76787.1Phosphoribulokinase/uridine kinase family protein; KEGG: tma:TM0751 5.4e-37 uridine kinase K00876; Psort location: Cytoplasmic, score: 8.96. (311 aa)    
Predicted Functional Partners:
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
 0.963
gap
Glyceraldehyde-3-phosphate dehydrogenase, type I; KEGG: nma:NMA0246 4.8e-116 glyceraldehyde 3-phosphate dehydrogenase C K00134; Psort location: Cytoplasmic, score: 9.97; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
 0.910
EFB74533.1
SNF2 family N-terminal domain protein; KEGG: lwe:lwe1660 2.1e-81 DNA/RNA helicase protein K01529.
   
 0.896
pyrH
UMP kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
   
 
 0.839
EFB74757.1
Hypothetical protein; KEGG: bur:Bcep18194_A4171 2.5e-06 alpha/beta hydrolase K01054.
  
 
 0.838
cmk
Cytidylate kinase; KEGG: ljo:LJ1089 2.0e-46 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.96.
   
 
 0.835
rpiB
KEGG: tte:TTE0146 9.3e-42 rpiB; ribose 5-phosphate isomerase B K01808; Psort location: Cytoplasmic, score: 8.96.
  
  0.832
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
    
 0.832
rpiB-2
Ribose-5-phosphate isomerase B; KEGG: cno:NT01CX_0543 5.7e-42 rpiB; ribose 5-phosphate isomerase B K01806; Psort location: Cytoplasmic, score: 8.96.
  
  0.832
hemZ
KEGG: bli:BL02869 2.6e-76 hemZ; coproporphyrinogen III oxidase K02495; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.831
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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