STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76030.1Transcriptional regulator, PadR family. (121 aa)    
Predicted Functional Partners:
EFB76031.1
Hypothetical protein; KEGG: csa:Csal_0694 6.5e-05 oxaloacetate decarboxylase K01570; Psort location: CytoplasmicMembrane, score: 9.46.
  
    0.789
EFB76029.1
Putative dipeptidase; KEGG: cpe:CPE1211 1.7e-65 Xaa-His dipeptidase K01439; Psort location: Cytoplasmic, score: 8.96.
       0.518
EFB75773.1
Sigma-70 region 2; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.487
EFB77625.1
Sigma-70 region 2; KEGG: bcz:BCZK3297 1.0e-10 RNA polymerase ECF-type sigma factor K03088; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.408
EFB77552.1
Sigma-70 region 2; KEGG: reh:H16_A2563 2.1e-12 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.408
EFB77333.1
Sigma-70 region 2; KEGG: reh:H16_A3447 8.1e-11 rpoE5; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.408
EFB77307.1
Sigma-70 region 2; KEGG: shn:Shewana3_0763 1.7e-08 RNA polymerase, sigma-24 subunit, ECF subfamily K00058; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.408
EFB76386.1
Sigma-70 region 2; KEGG: reh:H16_A2923 2.2e-10 rpoE4; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.408
EFB75977.1
Sigma-70 region 2; KEGG: chu:CHU_3562 8.4e-09 rpoE; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.96.
  
    0.408
EFB75981.1
Sigma-70 region 2; KEGG: reh:H16_A2563 0.0036 rpoE1; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K00960; Psort location: Cytoplasmic, score: 8.96; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.408
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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