STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFB76142.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (142 aa)    
Predicted Functional Partners:
EFB76141.1
Dinuclear metal center protein, YbgI family; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.923
FbpA
Fibronectin-binding protein A domain protein; Psort location: Cytoplasmic, score: 8.96.
       0.726
EFB76755.1
Putative YigZ family protein; KEGG: ctc:CTC02216 9.0e-28 thymidylate synthase K00560.
   
    0.591
EFB76143.1
Hydrid cluster protein-associated redox disulfide domain protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.580
EFB76620.1
Hypothetical protein.
  
     0.519
ytfJ
Sporulation protein YtfJ.
  
     0.478
EFB76144.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.467
EFB76145.1
Hypothetical protein; KEGG: mba:Mbar_A2536 8.6e-07 DNA-directed RNA polymerases I, II, and III, 7.3 kDa polypeptide K00960.
 
     0.460
EFB76795.1
YbbR-like protein.
  
    0.413
Your Current Organism:
Subdoligranulum variabile
NCBI taxonomy Id: 411471
Other names: S. variabile DSM 15176, Subdoligranulum variabile DSM 15176
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.