STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ36377.1Protein of unknown function. (231 aa)    
Predicted Functional Partners:
SKA14695.1
PAS domain S-box-containing protein.
   
 0.842
SJZ36473.1
Hypothetical protein.
   
 0.835
SJZ64336.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.822
SJZ43853.1
FHA domain-containing protein.
   
 
 0.700
SJZ36359.1
Hypothetical protein.
       0.625
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.573
SJZ64340.1
Signal transduction histidine kinase.
    
 0.570
SJZ43929.1
Protein phosphatase.
  
 0.568
SJZ67048.1
Signal transduction histidine kinase.
    
 0.566
SJZ35544.1
Signal transduction histidine kinase.
    
 0.533
Your Current Organism:
Sediminibacterium ginsengisoli
NCBI taxonomy Id: 413434
Other names: DSM 22335, JCM 15794, KCTC 12833, S. ginsengisoli, Sediminibacterium ginsengisoli Kim et al. 2013, strain DCY13
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