STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdpgp1GDP-D-glucose phosphorylase 1. (374 aa)    
Predicted Functional Partners:
Mrps6
Mitochondrial ribosomal protein S6.
    
 
 0.671
ggnbp2
Gametogenetin binding protein 2.
      
 0.628
amd1
S-adenosylmethionine decarboxylase proenzyme.
   
  
 0.595
uxs1
UDP-glucuronate decarboxylase 1.
     
 0.533
mrpl15
Mitochondrial ribosomal protein L15.
    
 
 0.514
ENSSDUP00000002477
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.497
mrpl47
Mitochondrial ribosomal protein L47.
    
   0.497
dap3
Death associated protein 3.
    
   0.497
mrpl41
Mitochondrial ribosomal protein L41.
    
   0.497
mrpl46
Mitochondrial ribosomal protein L46.
    
   0.497
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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