STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111232939Nidogen 1b. (1339 aa)    
Predicted Functional Partners:
hspg2
Heparan sulfate proteoglycan 2.
   
 0.732
ENSSDUP00000010761
Si:ch211-241e1.3.
  
 0.617
LAMA2
Laminin subunit alpha 2.
   
 0.561
agrn
Agrin.
   
 0.519
ENSSDUP00000002486
Kazal-like domain-containing protein.
   
 0.519
ENSSDUP00000002507
Kazal-like domain-containing protein.
   
 0.519
ush2a
Usher syndrome 2A (autosomal recessive, mild).
   
 0.514
lama5
Laminin, alpha 5.
   
 0.503
Lama3
Uncharacterized protein.
   
 0.503
lama4
Laminin, alpha 4.
   
 0.503
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.