STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RC1_0072Conserved hypothetical protein. (112 aa)    
Predicted Functional Partners:
RC1_0068
Phage portal protein, lambda family; Identified by match to protein family HMM PF05136 match to protein family HMM TIGR01539.
 
    0.940
u35
U35 peptidase, phage protease prohead HK97; Identified by match to protein family HMM PF04586.
 
    0.937
RC1_0066
Phage terminase large subunit (GpA); Identified by match to protein family HMM PF05876.
 
    0.936
RC1_0067
Conserved hypothetical protein.
 
     0.920
RC1_0064
Conserved hypothetical protein.
 
     0.870
RC1_0084
Phage tail tape measure protein, putative.
 
    0.836
RC1_1290
Phage portal protein, lambda family; Identified by match to protein family HMM PF00034 match to protein family HMM TIGR00782.
 
    0.836
RC1_1291
Phage protease; Identified by match to protein family HMM PF05545.
 
    0.835
nu1
Probable terminase small subunit, Nu1; Identified by Glimmer2 putative.
 
    0.833
RC1_1289
Phage terminase large subunit (GpA); Identified by match to protein family HMM PF00037 match to protein family HMM TIGR02745.
 
    0.831
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
Server load: low (26%) [HD]