STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
cbbL2Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. (472 aa)    
Predicted Functional Partners:
ccbS2
Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF01636.
 
 0.999
cbbS1
Ribulose bisphosphate carboxylase small chain.
 
 0.997
cbbP
Phosphopentokinase 1 identified by match to protein family HMM PF02322 match to protein family HMM TIGR00203.
 
 
 0.977
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF03180; Belongs to the phosphoglycerate kinase family.
    
 0.917
cbbL1
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
  
  
 
0.902
RC1_1309
Conserved hypothetical protein.
    
 
 0.862
cbbO
Rubisco activation protein CbbO, putative; [contains] von Willebrand factor type A domain identified by match to protein family HMM PF00016 match to protein family HMM PF02788.
 
   
 0.830
bchL
Light-independent protochlorophyllide reductase,iron-sulfur ATP-binding protein; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP.
      
 0.740
nifH
NifH, 4Fe-4S iron sulfur cluster binding protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
      
 0.739
cbbR2
RuBisCO operon transcriptional regulator; Contains PF03466 identified by match to protein family HMM PF00205 match to protein family HMM PF02775 match to protein family HMM PF02776; Belongs to the LysR transcriptional regulatory family.
 
   
 0.738
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.