Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RC1_2001RNA polymerase sigma-70 factor; Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542Probably contains a sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (229 aa)    
Predicted Functional Partners:
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.678
rpoC
DNA-directed RNA polymerase, beta' subunit, putative; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.677
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.666
rpoZ
DNA-directed RNA polymerase, omega subunit, putative; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.583
chrR
Transcriptional activator ChrR; Identified by match to protein family HMM PF01078 match to protein family HMM PF07728 match to protein family HMM TIGR00368.
   
 
 0.543
RC1_0968
RNA polymerase sigma-70 factor, ECF family protein; Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF00795 match to protein family HMM PF02540 match to protein family HMM TIGR00552; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.485
RC1_3903
RNA polymerase sigma-70 factor, ECF family protein; Contains Sigma-70 region 2 and Sigma-70 region 4, see PF04542 identified by match to protein family HMM PF00593 match to protein family HMM PF07715; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.470
RC1_0260
Conserved hypothetical protein; Identified by match to protein family HMM PF00583.
  
 
 0.469
RC1_0860
Conserved hypothetical protein; Identified by match to protein family HMM PF04378.
  
 
 0.469
RC1_1637
Conserved hypothetical protein.
  
 
 0.469
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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