STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gidBMethyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (216 aa)    
Predicted Functional Partners:
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
  
 0.975
gidA
Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
  
 0.968
parB
Also called ParB family protein; identified by match to protein family HMM PF01381 match to protein family HMM TIGR02607; Belongs to the ParB family.
  
  
 0.954
RC1_2812
ATPase involved in chromosome partitioning, putative; Contains domains of both ArsA & ParA.
 
  
 0.912
RC1_0389
Conserved hypothetical protein; Identified by match to protein family HMM PF00378.
  
  
 0.867
RC1_0060
DNA methylase, putative; Identified by match to protein family HMM PF01555 match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.798
RC1_0061
DNA methylase, putative; Identified by match to protein family HMM PF01555 match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.798
RC1_3743
Conserved hypothetical protein; Identified by match to protein family HMM PF01968 match to protein family HMM PF05378; Belongs to the ParB family.
  
  
 0.750
RC1_1297
Hypothetical protein; Identified by Glimmer2 putative.
  
  
 0.741
RC1_2814
Hypothetical protein; Identified by Glimmer2 putative.
       0.689
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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