node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RC1_1376 | RC1_1645 | RC1_1376 | RC1_1645 | DeaD; Identified by match to protein family HMM PF01804; Belongs to the DEAD box helicase family. | Ribonuclease, Rne. | 0.775 |
RC1_1376 | pnp | RC1_1376 | RC1_2919 | DeaD; Identified by match to protein family HMM PF01804; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase, putative; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.976 |
RC1_1376 | rne | RC1_1376 | RC1_1611 | DeaD; Identified by match to protein family HMM PF01804; Belongs to the DEAD box helicase family. | Ribonuclease, Rne; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.775 |
RC1_1376 | rplD | RC1_1376 | RC1_0712 | DeaD; Identified by match to protein family HMM PF01804; Belongs to the DEAD box helicase family. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.924 |
RC1_1376 | rpoA | RC1_1376 | RC1_0735 | DeaD; Identified by match to protein family HMM PF01804; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.800 |
RC1_1376 | rpoB | RC1_1376 | RC1_0701 | DeaD; Identified by match to protein family HMM PF01804; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.799 |
RC1_1645 | RC1_1376 | RC1_1645 | RC1_1376 | Ribonuclease, Rne. | DeaD; Identified by match to protein family HMM PF01804; Belongs to the DEAD box helicase family. | 0.775 |
RC1_1645 | dbpA | RC1_1645 | RC1_0868 | Ribonuclease, Rne. | ATP-independent RNA helicase protein; Belongs to the DEAD box helicase family. | 0.775 |
RC1_1645 | pnp | RC1_1645 | RC1_2919 | Ribonuclease, Rne. | Polyribonucleotide nucleotidyltransferase, putative; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.906 |
dbpA | RC1_1645 | RC1_0868 | RC1_1645 | ATP-independent RNA helicase protein; Belongs to the DEAD box helicase family. | Ribonuclease, Rne. | 0.775 |
dbpA | pnp | RC1_0868 | RC1_2919 | ATP-independent RNA helicase protein; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase, putative; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.976 |
dbpA | rne | RC1_0868 | RC1_1611 | ATP-independent RNA helicase protein; Belongs to the DEAD box helicase family. | Ribonuclease, Rne; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. | 0.775 |
dbpA | rplD | RC1_0868 | RC1_0712 | ATP-independent RNA helicase protein; Belongs to the DEAD box helicase family. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.924 |
dbpA | rpoA | RC1_0868 | RC1_0735 | ATP-independent RNA helicase protein; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.800 |
dbpA | rpoB | RC1_0868 | RC1_0701 | ATP-independent RNA helicase protein; Belongs to the DEAD box helicase family. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.799 |
nusA | pheS | RC1_2910 | RC1_2315 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | PF01409 TIGR00468: phenylalanyl-tRNA synthetase, alpha subunit; With a good score above the trusted cutoff and characterized homologs; identified by match to protein family HMM PF01416 match to protein family HMM TIGR00071. | 0.648 |
nusA | pnp | RC1_2910 | RC1_2919 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | Polyribonucleotide nucleotidyltransferase, putative; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.926 |
nusA | rimM | RC1_2910 | RC1_2208 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 16S rRNA processing protein RimM, putative; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. | 0.860 |
nusA | rplD | RC1_2910 | RC1_0712 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | Ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.968 |
nusA | rpoA | RC1_2910 | RC1_0735 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |