STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxB-2Thioredoxin reductase. (340 aa)    
Predicted Functional Partners:
ahpC
Alkyl hydroperoxide reductase C; Identified by match to protein family HMM PF02669 match to protein family HMM TIGR00681.
  
 
 0.961
trxB
Thioredoxin-disulfide reductase; Identified by match to protein family HMM PF01968 match to protein family HMM PF02538 match to protein family HMM PF05378.
  
  
 
0.906
sufS
Cysteine desulfurase; Identified by match to protein family HMM PF01661; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.905
trxB-3
Thioredoxin reductase; Identified by match to protein family HMM PF00593 match to protein family HMM PF07715.
  
  
 
0.905
RC1_1986
Cystathionine gamma-synthase (CGS) (O-succinylhomoserine(Thiol)-lyase); Identified by match to protein family HMM PF04085 match to protein family HMM TIGR00219.
   
 
 0.903
trx
Thioredoxin; Identified by match to protein family HMM PF02195 match to protein family HMM TIGR00180; Belongs to the thioredoxin family.
  
 
 0.894
nifU
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
  
 0.867
fdx
[contains] 2Fe-2S iron-sulfur cluster binding domain identified by match to protein family HMM PF00702 match to protein family HMM TIGR01449 match to protein family HMM TIGR01509 match to protein family HMM TIGR01549.
 
 
 
 0.858
RC1_2498
Thioredoxin, putative; Identified by match to protein family HMM PF01925.
  
 
 0.831
trxC
Thioredoxin 2; [synonyms] Protein-disulfide reductase identified by match to protein family HMM PF00289 match to protein family HMM PF00364 match to protein family HMM PF02222 match to protein family HMM PF02785 match to protein family HMM PF02786.
  
 
 0.827
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.