STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acnAAconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (902 aa)    
Predicted Functional Partners:
gltA
Citrate synthase I; Both chromosomal and plasmid encoded identified by match to protein family HMM PF00015 match to protein family HMM PF00672; Belongs to the citrate synthase family.
 
 0.993
icd
Isocitrate dehydrogenase; Identified by match to protein family HMM PF00015 match to protein family HMM PF00672.
 
 0.959
prpC
2-methylcitrate synthase; [synonyms] Citrate synt Hase II; Belongs to the citrate synthase family.
 
 0.949
aceA
Synonymincludes isocitrate lyase(EC 4.1.3.1) and malate synt Hase(EC 2.3.3.9) identified by match to protein family HMM PF00583.
   
 
 0.932
sodA
Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.917
sodA-2
Superoxide dismutase (Mn); Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.917
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
 
 0.915
sdhB
Succinate dehydrogenase iron-sulfur protein; Identified by match to protein family HMM PF00005; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.903
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.899
rpmJ
Ribosomal protein L36; Identified by match to protein family HMM PF03109; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.897
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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