STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbbS1Ribulose bisphosphate carboxylase small chain. (146 aa)    
Predicted Functional Partners:
cbbL1
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.999
cbbL2
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.997
cbbP
Phosphopentokinase 1 identified by match to protein family HMM PF02322 match to protein family HMM TIGR00203.
 
 
 0.989
cbbX
Rubisco accessary protein AAA type ATPase CbbX; Identified by match to protein family HMM PF07883.
 
  
 0.967
pgk
Phosphoglycerate kinase; Identified by match to protein family HMM PF03180; Belongs to the phosphoglycerate kinase family.
    
 0.919
ccbS2
Ribulose bisphosphate carboxylase, small subunit; Identified by match to protein family HMM PF01636.
  
  
 
0.914
cynT
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
    
 
 0.847
RC1_1309
Conserved hypothetical protein.
    
 
 0.843
cbbE
[synonyms] Pentose-5-phosphate 3-epimerase identified by match to protein family HMM PF00106 match to protein family HMM PF01073 match to protein family HMM PF01370 match to protein family HMM PF02719 match to protein family HMM PF04321 match to protein family HMM PF07993 match to protein family HMM TIGR01179; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.812
cbbZ
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.786
Your Current Organism:
Rhodospirillum centenum
NCBI taxonomy Id: 414684
Other names: R. centenum SW, Rhodocista centenaria SW, Rhodospirillum centenum SW, Rhodospirillum centenum str. SW, Rhodospirillum centenum strain SW
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