STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hofQType II secretory pathway, component HofQ. (432 aa)    
Predicted Functional Partners:
apfC
Fimbrial biogenesis protein; Pubmed:14742510.
 
 
 
 0.890
apfB
Fimbrial biogenesis protein; Pubmed:14742510.
 
 
 
 0.877
APL_0196
Hypothetical protein.
  
 
 0.851
APL_0197
Hypothetical protein.
       0.753
APL_0198
Hypothetical protein.
       0.753
APL_0199
Hypothetical protein.
       0.753
APL_1506
Hypothetical protein.
   
 
 0.687
clpX
ATP-dependent Clp protease ATP-binding subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
      
 0.629
comM
Competence protein comM.
      
 0.617
mrcA
Membrane carboxypeptidase/penicillin-binding protein.
 
   
 0.568
Your Current Organism:
Actinobacillus pleuropneumoniae
NCBI taxonomy Id: 416269
Other names: A. pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae L20, Actinobacillus pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae serovar 5b strain L20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.