STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hofQType II secretory pathway, component HofQ. (432 aa)    
Predicted Functional Partners:
apfC
Fimbrial biogenesis protein; Pubmed:14742510.
 
 
 
 0.912
apfB
Fimbrial biogenesis protein; Pubmed:14742510.
 
 
 
 0.902
APL_0196
Hypothetical protein.
  
 
 0.832
APL_0197
Hypothetical protein.
       0.755
APL_0198
Hypothetical protein.
       0.755
APL_0199
Hypothetical protein.
       0.755
APL_1506
Hypothetical protein.
   
 
 0.754
comM
Competence protein comM.
      
 0.674
mrcA
Membrane carboxypeptidase/penicillin-binding protein.
 
   
 0.641
apfA
Type 4 prepilin subunit ApfA precursor; Pubmed:14742510.
 
   
 0.612
Your Current Organism:
Actinobacillus pleuropneumoniae
NCBI taxonomy Id: 416269
Other names: A. pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae L20, Actinobacillus pleuropneumoniae serovar 5b str. L20, Actinobacillus pleuropneumoniae serovar 5b strain L20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.