Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
grcA | impA | APL_0361 | APL_0360 | Autonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins. | Hypothetical protein. | 0.432 |
grcA | pflA | APL_0361 | APL_1035 | Autonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins. | Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. | 0.774 |
grcA | ung | APL_0361 | APL_0362 | Autonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins. | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.531 |
impA | grcA | APL_0360 | APL_0361 | Hypothetical protein. | Autonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins. | 0.432 |
pflA | grcA | APL_1035 | APL_0361 | Pyruvate formate-lyase 1-activating enzyme; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family. | Autonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins. | 0.774 |
ung | grcA | APL_0362 | APL_0361 | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | Autonomous glycyl radical cofactor; Acts as a radical domain for damaged PFL and possibly other radical proteins. | 0.531 |