Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APL_0132 | deoD | APL_0132 | APL_1014 | Putative haloacid dehalogenase-like hydrolase. | Purine nucleoside phosphorylase DeoD-like protein. | 0.903 |
APL_0132 | mazG | APL_0132 | APL_0630 | Putative haloacid dehalogenase-like hydrolase. | Predicted pyrophosphatase. | 0.900 |
APL_0132 | pyrF | APL_0132 | APL_0736 | Putative haloacid dehalogenase-like hydrolase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.902 |
APL_0132 | pyrH | APL_0132 | APL_0569 | Putative haloacid dehalogenase-like hydrolase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.900 |
APL_0132 | pyrR | APL_0132 | APL_0401 | Putative haloacid dehalogenase-like hydrolase. | PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.900 |
APL_0132 | surE | APL_0132 | APL_1927 | Putative haloacid dehalogenase-like hydrolase. | 5'-nucleotidase surE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.906 |
APL_0132 | udk | APL_0132 | APL_0834 | Putative haloacid dehalogenase-like hydrolase. | Uridine kinase. | 0.924 |
APL_0132 | udp | APL_0132 | APL_1839 | Putative haloacid dehalogenase-like hydrolase. | Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. | 0.913 |
APL_0132 | upp | APL_0132 | APL_0398 | Putative haloacid dehalogenase-like hydrolase. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.907 |
APL_0132 | ushA | APL_0132 | APL_0769 | Putative haloacid dehalogenase-like hydrolase. | UshA precursor; Includes: UDP-sugar hydrolase; 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.918 |
deoD | APL_0132 | APL_1014 | APL_0132 | Purine nucleoside phosphorylase DeoD-like protein. | Putative haloacid dehalogenase-like hydrolase. | 0.903 |
deoD | pyrR | APL_1014 | APL_0401 | Purine nucleoside phosphorylase DeoD-like protein. | PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.900 |
deoD | surE | APL_1014 | APL_1927 | Purine nucleoside phosphorylase DeoD-like protein. | 5'-nucleotidase surE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.900 |
deoD | udp | APL_1014 | APL_1839 | Purine nucleoside phosphorylase DeoD-like protein. | Uridine phosphorylase; Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis. Belongs to the PNP/UDP phosphorylase family. | 0.931 |
deoD | upp | APL_1014 | APL_0398 | Purine nucleoside phosphorylase DeoD-like protein. | Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. | 0.908 |
deoD | ushA | APL_1014 | APL_0769 | Purine nucleoside phosphorylase DeoD-like protein. | UshA precursor; Includes: UDP-sugar hydrolase; 5'-nucleotidase; Belongs to the 5'-nucleotidase family. | 0.900 |
mazG | APL_0132 | APL_0630 | APL_0132 | Predicted pyrophosphatase. | Putative haloacid dehalogenase-like hydrolase. | 0.900 |
mazG | pyrF | APL_0630 | APL_0736 | Predicted pyrophosphatase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.900 |
mazG | pyrH | APL_0630 | APL_0569 | Predicted pyrophosphatase. | Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.900 |
mazG | pyrR | APL_0630 | APL_0401 | Predicted pyrophosphatase. | PyrR bifunctional protein; Regulates the transcription of the pyrimidine nucleotide (pyr) operon in response to exogenous pyrimidines. | 0.902 |
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