Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APL_0163 | cyaA | APL_0163 | APL_1054 | Anaerobic ribonucleoside triphosphate reductase. | Adenylate cyclase. | 0.900 |
APL_0163 | mazG | APL_0163 | APL_0630 | Anaerobic ribonucleoside triphosphate reductase. | Predicted pyrophosphatase. | 0.900 |
APL_0163 | moaA | APL_0163 | APL_0690 | Anaerobic ribonucleoside triphosphate reductase. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.807 |
APL_0163 | ndk | APL_0163 | APL_0351 | Anaerobic ribonucleoside triphosphate reductase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.910 |
APL_0163 | pykA | APL_0163 | APL_0187 | Anaerobic ribonucleoside triphosphate reductase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.900 |
APL_0163 | relA | APL_0163 | APL_0405 | Anaerobic ribonucleoside triphosphate reductase. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.900 |
APL_0163 | ribA | APL_0163 | APL_0384 | Anaerobic ribonucleoside triphosphate reductase. | Riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family. | 0.800 |
APL_0163 | spoT | APL_0163 | APL_1825 | Anaerobic ribonucleoside triphosphate reductase. | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp)ase); In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.900 |
crp | cyaA | APL_1965 | APL_1054 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | Adenylate cyclase. | 0.842 |
crp | icc | APL_1965 | APL_1942 | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | Protein Icc-like protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.618 |
cyaA | APL_0163 | APL_1054 | APL_0163 | Adenylate cyclase. | Anaerobic ribonucleoside triphosphate reductase. | 0.900 |
cyaA | crp | APL_1054 | APL_1965 | Adenylate cyclase. | Catabolite gene activator (cAMP receptor protein) (cAMP-regulatory protein). | 0.842 |
cyaA | icc | APL_1054 | APL_1942 | Adenylate cyclase. | Protein Icc-like protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. | 0.958 |
cyaA | mazG | APL_1054 | APL_0630 | Adenylate cyclase. | Predicted pyrophosphatase. | 0.900 |
cyaA | moaA | APL_1054 | APL_0690 | Adenylate cyclase. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.800 |
cyaA | ndk | APL_1054 | APL_0351 | Adenylate cyclase. | Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. | 0.900 |
cyaA | pykA | APL_1054 | APL_0187 | Adenylate cyclase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.900 |
cyaA | relA | APL_1054 | APL_0405 | Adenylate cyclase. | GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.900 |
cyaA | ribA | APL_1054 | APL_0384 | Adenylate cyclase. | Riboflavin biosynthesis protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the N-terminal section; belongs to the DHBP synthase family. | 0.800 |
cyaA | spoT | APL_1054 | APL_1825 | Adenylate cyclase. | Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (ppGpp)ase); In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.900 |
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