Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APL_1131 | APL_1135 | APL_1131 | APL_1135 | Hypothetical protein. | Hypothetical protein. | 0.773 |
APL_1131 | amiB | APL_1131 | APL_1136 | Hypothetical protein. | Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor. | 0.730 |
APL_1131 | coaD | APL_1131 | APL_1133 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.779 |
APL_1131 | kdtA | APL_1131 | APL_1132 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.979 |
APL_1131 | orn | APL_1131 | APL_1134 | Hypothetical protein. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.773 |
APL_1135 | APL_1131 | APL_1135 | APL_1131 | Hypothetical protein. | Hypothetical protein. | 0.773 |
APL_1135 | amiB | APL_1135 | APL_1136 | Hypothetical protein. | Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor. | 0.839 |
APL_1135 | coaD | APL_1135 | APL_1133 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.813 |
APL_1135 | kdtA | APL_1135 | APL_1132 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.776 |
APL_1135 | orn | APL_1135 | APL_1134 | Hypothetical protein. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.792 |
APL_1203 | coaA | APL_1203 | APL_1513 | Hypothetical protein. | Pantothenate kinase. | 0.903 |
APL_1203 | coaD | APL_1203 | APL_1133 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.900 |
APL_1203 | dfp | APL_1203 | APL_1969 | Hypothetical protein. | Coenzyme A biosynthesis bifunctional protein coaBC; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. | 0.900 |
APL_1347 | coaD | APL_1347 | APL_1133 | Putative methylase; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.749 |
amiB | APL_1131 | APL_1136 | APL_1131 | Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor. | Hypothetical protein. | 0.730 |
amiB | APL_1135 | APL_1136 | APL_1135 | Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor. | Hypothetical protein. | 0.839 |
amiB | coaD | APL_1136 | APL_1133 | Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.733 |
amiB | kdtA | APL_1136 | APL_1132 | Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor. | 3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.721 |
amiB | orn | APL_1136 | APL_1134 | Putative N-acetylmuramoyl-L-alanine amidase AmiB precursor. | Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. | 0.751 |
coaA | APL_1203 | APL_1513 | APL_1203 | Pantothenate kinase. | Hypothetical protein. | 0.903 |
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