STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tlet_1207PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: tma:TM0610 lipopolysaccharide biosynthesis protein. (356 aa)    
Predicted Functional Partners:
Tlet_2018
PFAM: UDP-glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; KEGG: tma:TM0583 lipopolysaccharide biosynthesis protein.
  
 0.963
Tlet_1188
PFAM: polysaccharide biosynthesis protein; KEGG: tma:TM0620 lipopolysaccharide biosynthesis protein.
  
  
 0.643
Tlet_1087
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tma:TM0572 lipopolysaccharide biosynthesis protein, putative; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.613
Tlet_2019
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tma:TM0668 pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.613
Tlet_1208
PFAM: nuclease (SNase domain protein); KEGG: hwa:HQ3375A endonuclease staphylococcal nuclease-like.
  
    0.559
Tlet_1906
PFAM: lipopolysaccharide biosynthesis protein; KEGG: tma:TM0644 hypothetical protein.
     
 0.557
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
       0.476
Tlet_0884
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: tma:TM0585 lipopolysaccharide biosynthesis protein BplA.
 
  
 0.454
Tlet_0392
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: csc:Csac_1172 oxidoreductase domain protein.
 
  
 0.453
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 
 0.436
Your Current Organism:
Pseudothermotoga lettingae
NCBI taxonomy Id: 416591
Other names: P. lettingae TMO, Pseudothermotoga lettingae TMO, Pseudothermotoga lettingae str. TMO, Pseudothermotoga lettingae strain TMO, Thermotoga lettingae TMO, Thermotoga sp. TMO
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