STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiAPutative prenyltransferase, UbiA family; Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase; High confidence in function and specificity. (319 aa)    
Predicted Functional Partners:
ispB
Similar to heptaprenyl diphosphate synthase component II; High confidence in function and specificity; Belongs to the FPP/GGPP synthase family.
 
  
 0.971
menX
Menaquinone biosynthesis related protein; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).
 
 
 
 0.888
llmg_0196
Prenyl transferase; Region start changed from 184692 to 184725 (-33 bases); Belongs to the FPP/GGPP synthase family.
 
   
 0.877
gerCA
Heptaprenyl diphosphate synthase component I; High confidence in function and specificity.
 
  
 0.836
menB
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).
 
   
 0.833
noxB
NADH dehydrogenase; High confidence in function and specificity.
 
  
 0.812
noxA
NADH dehydrogenase; High confidence in function and specificity.
 
    0.777
cydD
Cytochrome D ABC transporter ATP binding and permease protein; Involved in the cytochrome D branch of aerobic respiration; High confidence in function and specificity.
 
   
 0.692
cydC
Cytochrome D ABC transporter ATP binding and permease protein; Involved in the cytochrome D branch of aerobic respiration; High confidence in function and specificity.
 
     0.648
llmg_1112
Conserved hypothetical protein; Protein of unknown function DUF1312.
 
     0.589
Your Current Organism:
Lactococcus lactis
NCBI taxonomy Id: 416870
Other names: L. lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris MG1363, Lactococcus lactis subsp. cremoris str. MG1363, Lactococcus lactis subsp. cremoris strain MG1363
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.