Bathy06g02490 protein (Bathycoccus prasinos)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Bathy06g02490

Glutathione peroxidase. (289 aa)

Predicted Functional Partners:

Bathy10g04150

0.697

Bathy01g05260

0.694

Bathy18g00290

0.684

Bathy07g04440

0.678

Bathy02g04320

0.576

Bathy15g00500

0.576

Bathy01g03700

0.550

Bathy07g03380

0.498

Bathy08g04450

0.467

Bathy13g00630

0.467

Your Current Organism:

Bathycoccus prasinos

NCBI taxonomy Id: 41875
Other names: B. prasinos

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bathy01g03700	Bathy06g02490	K8E8Y7	K8EH03	Uncharacterized protein.	Glutathione peroxidase.	0.550
Bathy01g03700	Bathy10g04150	K8E8Y7	K8EJ46	Uncharacterized protein.	Thioredoxin reductase.	0.989
Bathy01g03700	Bathy18g00290	K8E8Y7	K8ERS3	Uncharacterized protein.	Mitochondrial manganese superoxide dismutase.	0.401
Bathy01g05260	Bathy06g02490	K8EYF2	K8EH03	Glutathione reductase; Maintains high levels of reduced glutathione.	Glutathione peroxidase.	0.694
Bathy01g05260	Bathy10g04150	K8EYF2	K8EJ46	Glutathione reductase; Maintains high levels of reduced glutathione.	Thioredoxin reductase.	0.914
Bathy01g05260	Bathy18g00290	K8EYF2	K8ERS3	Glutathione reductase; Maintains high levels of reduced glutathione.	Mitochondrial manganese superoxide dismutase.	0.586
Bathy02g04320	Bathy06g02490	K8EBN3	K8EH03	Sod_Cu domain-containing protein.	Glutathione peroxidase.	0.576
Bathy02g04320	Bathy10g04150	K8EBN3	K8EJ46	Sod_Cu domain-containing protein.	Thioredoxin reductase.	0.754
Bathy02g04320	Bathy18g00290	K8EBN3	K8ERS3	Sod_Cu domain-containing protein.	Mitochondrial manganese superoxide dismutase.	0.786
Bathy06g02490	Bathy01g03700	K8EH03	K8E8Y7	Glutathione peroxidase.	Uncharacterized protein.	0.550
Bathy06g02490	Bathy01g05260	K8EH03	K8EYF2	Glutathione peroxidase.	Glutathione reductase; Maintains high levels of reduced glutathione.	0.694
Bathy06g02490	Bathy02g04320	K8EH03	K8EBN3	Glutathione peroxidase.	Sod_Cu domain-containing protein.	0.576
Bathy06g02490	Bathy07g03380	K8EH03	K8F2J1	Glutathione peroxidase.	Uncharacterized protein.	0.498
Bathy06g02490	Bathy07g04440	K8EH03	K8F218	Glutathione peroxidase.	Chromo domain-containing protein required for cell polarity.	0.678
Bathy06g02490	Bathy08g04450	K8EH03	K8EI59	Glutathione peroxidase.	Dihydrolipoamide dehydrogenase.	0.467
Bathy06g02490	Bathy10g04150	K8EH03	K8EJ46	Glutathione peroxidase.	Thioredoxin reductase.	0.697
Bathy06g02490	Bathy13g00630	K8EH03	K8F3K6	Glutathione peroxidase.	Dihydrolipoyl dehydrogenase.	0.467
Bathy06g02490	Bathy15g00500	K8EH03	K8EPK1	Glutathione peroxidase.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.576
Bathy06g02490	Bathy18g00290	K8EH03	K8ERS3	Glutathione peroxidase.	Mitochondrial manganese superoxide dismutase.	0.684
Bathy07g03380	Bathy06g02490	K8F2J1	K8EH03	Uncharacterized protein.	Glutathione peroxidase.	0.498