STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDU51991.1Pentalenic acid synthase; Belongs to the cytochrome P450 family. (409 aa)    
Predicted Functional Partners:
SDU68845.1
Ferredoxin-NADP reductase.
 
 0.926
SDU76200.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 0.913
SDU52013.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
 
  
 0.882
SDU52001.1
Ferredoxin.
 
  
 0.871
SDU70051.1
UDP:flavonoid glycosyltransferase YjiC, YdhE family.
   
 0.858
SDU74717.1
UDP:flavonoid glycosyltransferase YjiC, YdhE family.
   
 0.858
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.854
cysC
Sulfate adenylyltransferase; Catalyzes the synthesis of activated sulfate.
   
 0.845
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.822
SDU25156.1
FAD binding domain-containing protein.
  
 0.737
Your Current Organism:
Jiangella alkaliphila
NCBI taxonomy Id: 419479
Other names: DSM 45079, J. alkaliphila, JBRI 2008, JCM 15620, Jiangella alkaliphila Lee 2008, KCTC 19222, strain D8-87
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